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software [2019/04/30 17:42] luca [ASPRAlign] |
software [2022/11/09 13:35] luca |
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- | ====== jHoles ====== | + | ====== ASPRAlign ====== |
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+ | [[https://github.com/bdslab/aspralign|ASPRAlign]] is a command line tool for Algebraic Structural Pseudoknot RNA Alignment. | ||
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- | [[https://www.jholes.eu/|jHoles]] is a tool for topological data analysis. | ||
====== ASPRAlign ====== | ====== ASPRAlign ====== | ||
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* {{ :aspralign-0.91.zip |Download}} the last version of ASPRAlign | * {{ :aspralign-0.91.zip |Download}} the last version of ASPRAlign | ||
- | * [[https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2689-5|Paper]] about Algebraic and Structural RNA Trees and computation of ASPRA distance among RNA secondary structures with arbitrary pseudoknots. | + | * [[https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2689-5|Paper]] about Algebraic and Structural RNA Trees and computation of the ASPRA Distance among RNA secondary structures with arbitrary pseudoknots |
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+ | ====== jHoles ====== | ||
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+ | [[https://www.jholes.eu/|jHoles]] is a tool for topological data analysis. | ||
====== DISPAS 2.0 ====== | ====== DISPAS 2.0 ====== |