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software [2019/04/30 17:42] luca [ASPRAlign] |
software [2022/11/09 13:39] luca [ASPRAlign] |
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- | ====== jHoles ====== | + | ====== ASPRAlign ====== |
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+ | [[https://github.com/bdslab/aspralign|ASPRAlign]] is a command line tool for Algebraic Structural Pseudoknot RNA Alignment. | ||
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- | [[https://www.jholes.eu/|jHoles]] is a tool for topological data analysis. | ||
====== ASPRAlign ====== | ====== ASPRAlign ====== | ||
[[https://github.com/bdslab/aspralign|ASPRAlign]] is a command line tool for Algebraic Structural Pseudoknot RNA Alignment. | [[https://github.com/bdslab/aspralign|ASPRAlign]] is a command line tool for Algebraic Structural Pseudoknot RNA Alignment. | ||
- | * {{ :aspralign-0.91.zip |Download}} the last version of ASPRAlign | + | * Quadrini, M., Tesei, L. & Merelli, E. An algebraic language for RNA pseudoknots comparison. BMC Bioinformatics 20 (Suppl 4), 161 (2019). [[https://doi.org/10.1186/s12859-019-2689-5]] |
- | * [[https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2689-5|Paper]] about Algebraic and Structural RNA Trees and computation of the ASPRA Distance among RNA secondary structures with arbitrary pseudoknots. | + | * Michela Quadrini, Luca Tesei, Emanuela Merelli, ASPRAlign: a tool for the alignment of RNA secondary structures with arbitrary pseudoknots, Bioinformatics, Volume 36, Issue 11, June 2020, Pages 3578–3579, [[https://doi.org/10.1093/bioinformatics/btaa147]] |
+ | * [[https://github.com/bdslab/aspralign/tree/master/download|Download]] the last version of ASPRAlign | ||
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+ | ====== jHoles ====== | ||
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+ | [[https://www.jholes.eu/|jHoles]] is a tool for topological data analysis. | ||
====== DISPAS 2.0 ====== | ====== DISPAS 2.0 ====== |