Agent-based models for detecting the driving forces of biomolecular interactions

Agent-based learning model for the obesity paradox in RCC

Machine learning models predicting multidrug-resistant urinary tract infections using dsaaS<\a>

Topological Interpretation of Interactive Computation

Visualising 2-simplex formation in metabolic reactions

ASPRAlign: A tool for the alignment of RNA secondary structures with arbitrary pseudoknots

Process calculi may reveal the equivalence lying at the heart of RNA and proteins

An algebraic language for RNA pseudoknots comparison

A persistent entropy automaton for the Dow Jones stock market

Topological classifier for detecting the emergence epileptic seazures

A new topological entropy-based approach for measuring similarities among piecewise linear functions

The Topological Field Theory of Data: mining data beyond complex networks

The Topological Field Theory of Data: a program towards a novel strategy for mining data through data language

Topology driven modeling - the Immune System metaphor

Non-Locality, Topology, Formal Languages: new global tools to handle large data sets

Adaptability checking in complex systems

Topological Characterization of Complex Systems: Using Persistent Entropy

All Publications

Scopus Google Scholar DBLP PubMed

Selected invited Talks

*The topology of RNA*. Workshop on Discrete and Topological Models for Molecular Biology, Tampa (USA), May 2022

*A topological interpretation of interactive computation*. Symposium in honor of Scott Smolka, Stony Brook (USA), August 2019

*A topological view of compositionality of process algebra*. Open Problems in Concurrency Theory, Wien, June 2017

* A Topological Approach to Compositionality in Complex Systems*. Workshop on Compositionality, Simon Institute Berkeley, December 2016.

* On Topological Characterization of Complex Systems*. DyM-CS CCS2016, Amsterdam, September 2016.

* The Topological Field Theory of Data: a program towards a novel strategy for mining data through data language*. BIONETICS, New York, December 2015.

* Non-locality, topology, formal languages: new global tools to handle large data sets*. Next Generation Sequencing Data Congress, London, June 2015.

*Topological field theory of data*. EU-FET Unit, Brussels, March 2015.

*From Topology to Formal Languages: a multiscale analysis*, at Multiscale Modelling and Computing. Workshop at Lorentz Center, Leiden, April 2013.

*Oncology over Internet: a data integration and analysis by agent platform*. ISIBio Pasteur Institute, Paris, December 2005

*Last modified: May 2022*