Case Studies

Immune System

  • Emanuela Merelli, Matteo Rucco, Peter M. A. Sloot, Luca Tesei. “Topological Characterization of Complex Systems: Using Persistent Entropy”. Entropy 17(10): 6872-6892 (2015) Open Access Link
  • Emanuela Merelli, Marco Pettini, Mario Rasetti. “Topology driven modeling: the IS metaphor”. Natural Computing 14(3): 421-430 (2015) Open Access Link
  • Matteo Rucco, Filippo Castiglione, Emanuela Merelli, Marco Pettini. “Characterisation of the Idiotypic Immune Network Through Persistent Entropy”. Proceedings of ECCS 2014. Springer Proceedings in Complexity: 117-128 (2016) Link

Epileptic Brain

  • Marco Piangerelli, Matteo Rucco, Luca Tesei, Emanuela Merelli. “Topological classifier for detecting the emergence of epileptic seizures”. BMC Research Notes 2018 11:392 Open Access Link
  • Emanuela Merelli, Marco Piangerelli, Matteo Rucco, Daniele Toller. “A topological approach for multivariate time series characterization: the epileptic brain”. EAI Endorsed Trans. Self-Adaptive Systems 2(7): e5 (2016) Open Access Link
  • Emanuela Merelli, Marco Piangerelli. “RNN-based Model for Self-adaptive Systems - The Emergence of Epilepsy in the Human Brain”. IJCCI (NCTA) 2014: 356-361 Open Access Link

RNA

  • Michela Quadrini, Luca Tesei, Emanuela Merelli. “An algebraic representation for tree alignment of RNA pseudoknotted structures”. PeerJ Preprints 5:e3327v1 Open Access Link
  • Adane Letta Mamuye, Matteo Rucco, Luca Tesei, Emanuela Merelli. “Persistent Homology Analysis of RNA”. Journal of Molecular Based Mathematical Biology, 2016, 4:14-25. Open Access Link
  • Adane Letta Mamuye, Emanuela Merelli, Luca Tesei. “A Graph Grammar for Modelling RNA Folding”. CoRR abs/1612.01639 (2016) Open Access Link
  • Adane Letta Mamuye, Emanuela Merelli, Luca Tesei. “Towards a Shape Language for Interpreting RNA Folding”. BICT 2015: 185-188 Open Access Link
  • Adane Letta Mamuye, Matteo Rucco. “Persistent Homology on RNA Secondary Structure Space”. BICT 2015: 189-192 Open Access Link