GitHub Repository


TaxonClassifier is a tool for automatic taxonomy reconstruction via agglomerative clustering.

  • Quadrini, Michela; Tesei, Luca; Merelli, Emanuela (2022): Benchmark of 5S, 16S and 23S rRNA Secondary Structures. figshare. Dataset.
  • Quadrini, Michela; Tesei, Luca; Merelli, Emanuela (2022): Automatic Generation of Pseudoknotted RNAs Taxonomy. Submitted, Under Revision. The work introduces the benchmark linked above.


ASPRAlign is a command line tool for Algebraic Structural Pseudoknot RNA Alignment.


jHoles is a tool for topological data analysis.


Dispas 2.0 is an agent-based simulator for fish stock evaluation. It has been implemented focusing on the stock of common sole of the Noerthern and Central Adriatic See.

This website uses cookies. By continuing to use this website, you agree to their use. To find out more, including how to control cookies, see here: Privacy and Cookie Policy