TaxonClassifier

TaxonClassifier is a tool for automatic taxonomy reconstruction via agglomerative clustering.

  • Quadrini, Michela; Tesei, Luca; Merelli, Emanuela (2022): Benchmark of 5S, 16S and 23S rRNA Secondary Structures. figshare. Dataset. https://doi.org/10.6084/m9.figshare.20731783.v1
  • Quadrini, Michela; Tesei, Luca; Merelli, Emanuela (2022): Automatic Generation of Pseudoknotted RNAs Taxonomy. Submitted, Under Revision. The work introduces the benchmark linked above.

ASPRAlign

ASPRAlign is a command line tool for Algebraic Structural Pseudoknot RNA Alignment.

jHoles

jHoles is a tool for topological data analysis.

DISPAS 2.0

Dispas 2.0 is an agent-based simulator for fish stock evaluation. It has been implemented focusing on the stock of common sole of the Noerthern and Central Adriatic See.

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